Transcript: LINC00566:5

Basic information

LNCipedia transcript ID: LINC00566:5 
HGNC Gene Symbol: LINC00566    
HGNC Full Gene Name: long intergenic non-protein coding RNA 566
Ensembl Gene ID: ENSG00000261498
Ensembl Transcript ID: ENST00000561557
RefSeq ID: NR_131903
Location (hg19): chr13:24905588-24911259
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 570 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000561557.1; RP11-169O17.6-001; OTTHUMT00000431320.1; NONHSAT032509; NR_131903.1
Alternative gene names: ENSG00000261498.1; RP11-169O17.6; OTTHUMG00000175964.1; LINC00566


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 7.4444 non-coding 
CPAT coding probability 2.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00566:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C1QTNF9-1:1
4.0 lnc-C1QTNF9-1:1
4.1 lnc-C1QTNF9-1:1
5.0 lnc-C1QTNF9-1:1
5.1 LINC00566:3
5.2 LINC00566:5