Transcript: LINC00571:1

Basic information

LNCipedia transcript ID: LINC00571:1 
HGNC Gene Symbol: LINC00571    
HGNC Full Gene Name: long intergenic non-protein coding RNA 571
Ensembl Gene ID: ENSG00000223685
Ensembl Transcript ID: ENST00000434565
RefSeq ID: NR_047500
Location (hg19): chr13:38624954-38717369
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 521 bp
Exons: 6
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000434565; ENST00000434565.1; LINC00571-001; OTTHUMT00000044593.1; NONHSAT033262; NR_047500; ENST00000434565.5; NR_047500.1
Alternative gene names: ENSG00000223685; RP11-196I2.1; ENSG00000223685.1; LINC00571; OTTHUMG00000016755.1; ENSG00000223685.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -6.486 non-coding 
CPAT coding probability 10.83% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00571:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TRPC4-1:1
3.1 lnc-TRPC4-1:1
4.0 LINC00571:1
4.1 LINC00571:1
5.0 LINC00571:1
5.1 LINC00571:1
5.2 LINC00571:1