Transcript: LINC00578:15

Basic information

LNCipedia transcript ID: LINC00578:15 
LNCipedia gene ID: LINC00578
Location (hg19): chr3:177401415-177409022
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 571 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000423466; ENST00000423466.1; RP11-114M1.1-001; OTTHUMT00000348098.2
Alternative gene names: ENSG00000228561; RP11-114M1.1; ENSG00000228561.1; OTTHUMG00000157235.2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -273.0829 non-coding 
CPAT coding probability 1.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00578:15 no no no no

Available literature

  1. Ye (2017), Intergenic variants may predispose to major depression disorder through regulation of long non-coding RNA expression., Gene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KCNMB2-4:1
3.1 lnc-KCNMB2-4:1
4.0 lnc-KCNMB2-4:1
4.1 LINC00578:15
5.0 LINC00578:15
5.1 LINC00578:15
5.2 LINC00578:15