Transcript: LINC00578:2

Basic information

LNCipedia transcript ID: LINC00578:2 
LNCipedia gene ID: LINC00578
RefSeq ID: NR_047568
Location (hg19): chr3:177159709-177470492
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1222 bp
Exons: 4
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT093344; NR_047568; NR_047568.1
Alternative gene names: ; LINC00578


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -46.7122 non-coding 
CPAT coding probability 4.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00578:2 no no no no

Available literature

  1. Ye (2017), Intergenic variants may predispose to major depression disorder through regulation of long non-coding RNA expression., Gene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KCNMB2-5:6
4.0 LINC00578:2
4.1 LINC00578:2
5.0 LINC00578:2
5.1 LINC00578:2
5.2 LINC00578:2