Transcript: LINC00581:10

Basic information

LNCipedia transcript ID: LINC00581:10 
LNCipedia gene ID: LINC00581
Ensembl Gene ID: ENSG00000231754
Ensembl Transcript ID: ENST00000637411
Location (hg19): chr6:21521909-21524014
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2106 bp
Exons: 1
Sources: Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000637411.1
Alternative gene names: ENSG00000231754.2; RP11-204E9.1; ; AL512380.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -45.7975 non-coding 
CPAT coding probability 0.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00581:10 no no no no

Available literature

  1. Henshall (2015), Epigenetics and Epilepsy., Cold Spring Harb Perspect Med
  2. Vandeweyer (2012), A de novo balanced t(2;6)(p15;p22.3) in a patient with West Syndrome disrupts a lnc-RNA., Epilepsy Res.
  3. Cabili (2011), Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses., Genes Dev.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 LINC00581:10
5.0 LINC00581:10
5.1 LINC00581:10
5.2 LINC00581:10