Transcript: LINC00581:3

Basic information

LNCipedia transcript ID: LINC00581:3 
LNCipedia gene ID: LINC00581
Location (hg19): chr6:21486298-21502716
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 507 bp
Exons: 2
Sources: Broad Institute; long non-coding rna db - lncrnadb.com; NONCODE v4
Alternative transcript names: TCONS_00012107; NONHSAT108038
Alternative gene names: XLOC_005637; linc-MBOAT1-4; bx118339;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -112.9263 non-coding 
CPAT coding probability 0.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00581:3 no no no no

Available literature

  1. Henshall (2015), Epigenetics and Epilepsy., Cold Spring Harb Perspect Med
  2. Vandeweyer (2012), A de novo balanced t(2;6)(p15;p22.3) in a patient with West Syndrome disrupts a lnc-RNA., Epilepsy Res.
  3. Cabili (2011), Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses., Genes Dev.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PRL-6:1
3.1 lnc-PRL-6:1
4.0 LINC00581:3
4.1 LINC00581:3
5.0 LINC00581:3
5.1 LINC00581:3
5.2 LINC00581:3