Transcript: LINC00606:2

Basic information

LNCipedia transcript ID: LINC00606:2 
HGNC Gene Symbol: LINC00606    
HGNC Full Gene Name: long intergenic non-protein coding RNA 606
Ensembl Gene ID: ENSG00000226567
Ensembl Transcript ID: ENST00000436060
Location (hg19): chr3:10803391-10805866
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 429 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005741; ENST00000436060; ENST00000436060.1; LINC00606-002; OTTHUMT00000340199.1
Alternative gene names: XLOC_003045; linc-ATP2B2-2; ENSG00000226567; AC018495.2; ENSG00000226567.1; LINC00606; OTTHUMG00000155455.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -568.462 non-coding 
CPAT coding probability 5.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00606:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ATP2B2-2:2
3.1 lnc-ATP2B2-2:2
4.0 LINC00606:2
4.1 LINC00606:2
5.0 LINC00606:2
5.1 LINC00606:2
5.2 LINC00606:2