Transcript: LINC00609:1

Basic information

LNCipedia transcript ID: LINC00609:1 
HGNC Gene Symbol: LINC00609    
HGNC Full Gene Name: long intergenic non-protein coding RNA 609
Ensembl Gene ID: ENSG00000257585
Ensembl Transcript ID: ENST00000546508
RefSeq ID: NR_073454
Location (hg19): chr14:36539633-36634494
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 583 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000546508; ENST00000546508.1; LINC00609-001; OTTHUMT00000409825.1; NONHSAT036408; NR_073454; NR_073454.1
Alternative gene names: ENSG00000257585; RP11-259K15.3; ENSG00000257585.1; LINC00609; OTTHUMG00000170616.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -179.6317 non-coding 
CPAT coding probability 2.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00609:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BRMS1L-1:1
3.1 lnc-BRMS1L-2:1
4.0 LINC00609:1
4.1 LINC00609:1
5.0 LINC00609:1
5.1 LINC00609:1
5.2 LINC00609:1