Transcript: LINC00620:4

Basic information

LNCipedia transcript ID: LINC00620:4 
HGNC Gene Symbol: LINC00620    
HGNC Full Gene Name: long intergenic non-protein coding RNA 620
Ensembl Gene ID: ENSG00000224514
Ensembl Transcript ID: ENST00000438915
Location (hg19): chr3:13692196-13788126
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 524 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000438915.1; AC093611.1-002; OTTHUMT00000340429.1; NONHSAT088312
Alternative gene names: ENSG00000224514.1; AC093611.1; OTTHUMG00000155508.1; LINC00620; ENSG00000224514.2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00620:4 no no no no

Available literature

  1. Senchenko (2013), Novel tumor suppressor candidates on chromosome 3 revealed by NotI-microarrays in cervical cancer., Epigenetics
  2. Alliey-Rodriguez (2011), Genome-wide association study of personality traits in bipolar patients., Psychiatr. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FBLN2-1:1
4.0 LINC00620:4
4.1 LINC00620:4
5.0 LINC00620:4
5.1 LINC00620:4
5.2 LINC00620:4