Transcript: LINC00629:3

Basic information

LNCipedia transcript ID: LINC00629:3 
HGNC Gene Symbol: LINC00629    
HGNC Full Gene Name: long intergenic non-protein coding RNA 629
Ensembl Gene ID: ENSG00000227060
Ensembl Transcript ID: ENST00000434384
Location (hg19): chrX:133684003-133693953
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 724 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000434384; TCONS_00017012; ENST00000434384.1; AC004383.5-001; OTTHUMT00000058374.1; NONHSAT138635; ENST00000434384.5
Alternative gene names: ENSG00000227060; XLOC_008068; linc-FAM122C-2; AC004383.5; ENSG00000227060.1; OTTHUMG00000022456.1; ENSG00000227060.2; LINC00629; ENSG00000227060.6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -108.2516 non-coding 
CPAT coding probability 0.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00629:3 no no no no

Available literature

  1. Muys (2016), Placenta-Enriched LincRNAs MIR503HG and LINC00629 Decrease Migration and Invasion Potential of JEG-3 Cell Line., PLoS ONE
  2. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HPRT1-1:3
3.1 lnc-HPRT1-1:3
4.0 LINC00629:3
4.1 LINC00629:3
5.0 LINC00629:3
5.1 LINC00629:3
5.2 LINC00629:3