Transcript: LINC00635:15

Basic information

LNCipedia transcript ID: LINC00635:15 
HGNC Gene Symbol: LINC00635    
HGNC Full Gene Name: long intergenic non-protein coding RNA 635
Ensembl Gene ID: ENSG00000241469
Ensembl Transcript ID: ENST00000609429
Location (hg19): chr3:107586158-107596923
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 743 bp
Exons: 5
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000609429.1; ENST00000609429.5
Alternative gene names: ENSG00000241469.3; LINC00635; ENSG00000241469.7;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -70.2656 non-coding 
CPAT coding probability 1.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00635:15 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CD47-2:22
4.0 LINC00635:15
4.1 LINC00635:15
5.0 LINC00635:15
5.1 LINC00635:15
5.2 LINC00635:15