Transcript: LINC00635:19

Basic information

LNCipedia transcript ID: LINC00635:19 
LNCipedia gene ID: LINC00635
Location (hg19): chr3:107591815-107596915
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 545 bp
Exons: 5
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00005809; ENST00000473528; ENST00000473528.1; RP11-631B21.1-005; OTTHUMT00000353784.1; NONHSAT091072
Alternative gene names: XLOC_003208; linc-CBLB-9; ENSG00000241469; RP11-631B21.1; ENSG00000241469.1; OTTHUMG00000159195.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -110.8171 non-coding 
CPAT coding probability 0.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00635:19 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CD47-2:10
3.1 lnc-CD47-2:11
4.0 LINC00635:19
4.1 LINC00635:19
5.0 LINC00635:19
5.1 LINC00635:19
5.2 LINC00635:19