Transcript: LINC00641:3

Basic information

LNCipedia transcript ID: LINC00641:3 
LNCipedia gene ID: LINC00641
RefSeq ID: NR_038971
Location (hg19): chr14:21668238-21675059
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2145 bp
Exons: 2
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT035664; NR_038971; NR_038971.1
Alternative gene names: ; LINC00641


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -52.538 non-coding 
CPAT coding probability 1.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00641:3 no no no no

Available literature

  1. Wang (2015), Identification of lncRNA-associated competing triplets reveals global patterns and prognostic markers for cancer., Nucleic Acids Res.
  2. Zhi (2015), The Use of Three Long Non-Coding RNAs as Potential Prognostic Indicators of Astrocytoma., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HNRNPC-1:4
4.0 LINC00641:3
4.1 LINC00641:3
5.0 LINC00641:3
5.1 LINC00641:3
5.2 LINC00641:3