Transcript: LINC00641:4

Basic information

LNCipedia transcript ID: LINC00641:4 
LNCipedia gene ID: LINC00641
Location (hg19): chr14:21667929-21673762
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 5834 bp
Exons: 1
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA399:1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 15.2981 non-coding 
CPAT coding probability 1.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00641:4 no no no no

Available literature

  1. Wang (2015), Identification of lncRNA-associated competing triplets reveals global patterns and prognostic markers for cancer., Nucleic Acids Res.
  2. Zhi (2015), The Use of Three Long Non-Coding RNAs as Potential Prognostic Indicators of Astrocytoma., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 LINC00641:4
4.1 LINC00641:4
5.0 LINC00641:4
5.1 LINC00641:4
5.2 LINC00641:4