Transcript: LINC00642:3

Basic information

LNCipedia transcript ID: LINC00642:3 
HGNC Gene Symbol: LINC00642    
HGNC Full Gene Name: long intergenic non-protein coding RNA 642
Ensembl Gene ID: ENSG00000233208
Ensembl Transcript ID: ENST00000442515
Location (hg19): chr14:90921574-90925210
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 670 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000442515; ENST00000442515.1; AL096869.5-003; OTTHUMT00000313932.1; ENST00000442515.5
Alternative gene names: ENSG00000233208; AL096869.5; ENSG00000233208.1; OTTHUMG00000149923.1; LINC00642; ENSG00000233208.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -29.8326 non-coding 
CPAT coding probability 1.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00642:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CALM1-1:3
3.1 lnc-CALM1-1:3
4.0 LINC00642:3
4.1 LINC00642:3
5.0 LINC00642:3
5.1 LINC00642:3
5.2 LINC00642:3