Transcript: LINC00642:9

Basic information

LNCipedia transcript ID: LINC00642:9 
LNCipedia gene ID: LINC00642
Location (hg19): chr14:90921678-90923558
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 368 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00022594; NONHSAT039228
Alternative gene names: XLOC_010902; linc-C14orf159-3;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -158.4191 non-coding 
CPAT coding probability 1.73% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00642:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CALM1-1:8
3.1 lnc-CALM1-1:8
4.0 LINC00642:9
4.1 LINC00642:9
5.0 LINC00642:9
5.1 LINC00642:9
5.2 LINC00642:9