Transcript: LINC00645:3

Basic information

LNCipedia transcript ID: LINC00645:3 
HGNC Gene Symbol: LINC00645    
HGNC Full Gene Name: long intergenic non-protein coding RNA 645
Ensembl Gene ID: ENSG00000258548
Ensembl Transcript ID: ENST00000557399
Location (hg19): chr14:28081817-28108842
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3512 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000557399; ENST00000557399.1; RP11-572M18.1-001; OTTHUMT00000409673.1
Alternative gene names: ENSG00000258548; RP11-572M18.1; ENSG00000258548.1; OTTHUMG00000170580.1; LINC00645; ENSG00000258548.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -13.9638 non-coding 
CPAT coding probability 0.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00645:3 no no no no

Available literature

  1. Bannon (2015), Identification of long noncoding RNAs dysregulated in the midbrain of human cocaine abusers., J. Neurochem.
  2. Blondeau (2015), Identification of novel long non-coding RNAs in clear cell renal cell carcinoma., Clin Epigenetics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FOXG1-2:2
3.1 lnc-FOXG1-2:2
4.0 LINC00645:3
4.1 LINC00645:3
5.0 LINC00645:3
5.1 LINC00645:3
5.2 LINC00645:3