Transcript: LINC00649:24

Basic information

LNCipedia transcript ID: LINC00649:24 
HGNC Gene Symbol: LINC00649    
HGNC Full Gene Name: long intergenic non-protein coding RNA 649
Ensembl Gene ID: ENSG00000237945
Ensembl Transcript ID: ENST00000620580
Location (hg19): chr21:35334531-35341895
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 779 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000620580.1
Alternative gene names: ENSG00000237945.7; LINC00649; TCONS_00028768


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -1.121 non-coding 
CPAT coding probability 15.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00649:24 no no no no

Available literature

  1. Liu (2015), Expression Signatures of Long Noncoding RNAs in Adolescent Idiopathic Scoliosis., Biomed Res Int


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 LINC00649:24
4.1 LINC00649:24
5.0 LINC00649:24
5.1 LINC00649:24
5.2 LINC00649:24