Transcript: LINC00652:7

Basic information

LNCipedia transcript ID: LINC00652:7 
LNCipedia gene ID: LINC00652
RefSeq ID: NR_026884
Location (hg19): chr20:18768615-18774626
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1382 bp
Exons: 3
Sources: Broad Institute; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00027841; NR_026884; NR_026884.1
Alternative gene names: XLOC_013669; linc-RBBP9-5; HSPC072; LINC00652


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 7.7365 non-coding 
CPAT coding probability 0.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00652:7 no no no no

Available literature

  1. Zhang (2000), Cloning and functional analysis of cDNAs with open reading frames for 300 previously undefined genes expressed in CD34+ hematopoietic stem/progenitor cells., Genome Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C20orf78-1:6
3.1 lnc-C20orf78-1:6
4.0 LINC00652:7
4.1 LINC00652:7
5.0 LINC00652:7
5.1 LINC00652:7
5.2 LINC00652:7