Transcript: LINC00652:8

Basic information

LNCipedia transcript ID: LINC00652:8 
LNCipedia gene ID: LINC00652
Location (hg19): chr20:18766545-18774623
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3388 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000179935.5|HBMT00000896828.1
Alternative gene names: HSPC072


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 8.7328 non-coding 
CPAT coding probability 58.87% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC00652:8 no no no no

Available literature

  1. Zhang (2000), Cloning and functional analysis of cDNAs with open reading frames for 300 previously undefined genes expressed in CD34+ hematopoietic stem/progenitor cells., Genome Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 LINC00652:8
5.0 LINC00652:8
5.1 LINC00652:8
5.2 LINC00652:8