Transcript: LINC00656:1

Basic information

LNCipedia transcript ID: LINC00656:1 
LNCipedia gene ID: LINC00656
RefSeq ID: NR_034149
Location (hg19): chr20:23105705-23113273
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1911 bp
Exons: 4
Sources: Broad Institute; NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00027847; NONHSAT079035; NR_034149; NR_034149.1
Alternative gene names: XLOC_013689; linc-CD93-5; ; LINC00656


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -16.5954 non-coding 
CPAT coding probability 15.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00656:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CD93-2:1
3.1 lnc-CD93-2:1
4.0 LINC00656:1
4.1 LINC00656:1
5.0 LINC00656:1
5.1 LINC00656:1
5.2 LINC00656:1