Transcript: LINC00658:16

Basic information

LNCipedia transcript ID: LINC00658:16 
HGNC Gene Symbol: LINC00658    
HGNC Full Gene Name: long intergenic non-protein coding RNA 658
Ensembl Gene ID: ENSG00000226995
Ensembl Transcript ID: ENST00000414677
Location (hg19): chr20:5412638-5413249
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 442 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000414677; ENST00000414677.1; RP5-828H9.3-001; OTTHUMT00000077866.1; NONHSAT147152
Alternative gene names: ENSG00000226995; RP5-828H9.3; ENSG00000226995.1; OTTHUMG00000031805.1; ENSG00000226995.3; LINC00658; ENSG00000226995.7;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -96.0365 non-coding 
CPAT coding probability 3.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00658:16 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GPCPD1-3:3
3.1 lnc-GPCPD1-3:3
4.0 LINC00658:16
4.1 LINC00658:16
5.0 LINC00658:16
5.1 LINC00658:16
5.2 LINC00658:16