Transcript: LINC00662:25

Basic information

LNCipedia transcript ID: LINC00662:25 
LNCipedia gene ID: LINC00662
Ensembl Gene ID: ENSG00000261824
Ensembl Transcript ID: ENST00000588027
Location (hg19): chr19:28175488-28284286
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 562 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT063962; ENST00000588027.1; ENST00000588027.5
Alternative gene names: ENSG00000261824.2; LINC00662; ENSG00000261824.6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 22.5167 non-coding 
CPAT coding probability 0.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00662:25 no no no no

Available literature

  1. Di Gaetano (2014), Sardinians genetic background explained by runs of homozygosity and genomic regions under positive selection., PLoS ONE
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-UQCRFS1-9:38
4.0 LINC00662:25
4.1 LINC00662:25
5.0 LINC00662:25
5.1 LINC00662:25
5.2 LINC00662:25