Transcript: LINC00662:41

Basic information

LNCipedia transcript ID: LINC00662:41 
LNCipedia gene ID: LINC00662
Location (hg19): chr19:28220918-28241848
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 479 bp
Exons: 4
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00027265; NONHSAT063974
Alternative gene names: XLOC_013282; linc-ZNF681-4;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 32.8017 non-coding 
CPAT coding probability 0.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00662:41 no no no no

Available literature

  1. Di Gaetano (2014), Sardinians genetic background explained by runs of homozygosity and genomic regions under positive selection., PLoS ONE
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-UQCRFS1-7:23
3.1 lnc-UQCRFS1-9:23
4.0 LINC00662:41
4.1 LINC00662:41
5.0 LINC00662:41
5.1 LINC00662:41
5.2 LINC00662:41