Transcript: LINC00662:43

Basic information

LNCipedia transcript ID: LINC00662:43 
LNCipedia gene ID: LINC00662
Ensembl Gene ID: ENSG00000261824
Ensembl Transcript ID: ENST00000561521
Location (hg19): chr19:28221181-28237138
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2480 bp
Exons: 3
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00026813; ENST00000561521.1; CTC-459F4.2-001; OTTHUMT00000431033.1; NONHSAT146970
Alternative gene names: XLOC_013282; linc-ZNF681-4; ENSG00000261824.1; CTC-459F4.2; OTTHUMG00000175754.1; ENSG00000261824.2; LINC00662; ENSG00000261824.6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00662:43 no no no no

Available literature

  1. Di Gaetano (2014), Sardinians genetic background explained by runs of homozygosity and genomic regions under positive selection., PLoS ONE
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-UQCRFS1-7:25
3.1 lnc-UQCRFS1-9:24
4.0 LINC00662:43
4.1 LINC00662:43
5.0 LINC00662:43
5.1 LINC00662:43
5.2 LINC00662:43