Transcript: LINC00663:8

Basic information

LNCipedia transcript ID: LINC00663:8 
HGNC Gene Symbol: LINC00663    
HGNC Full Gene Name: long intergenic non-protein coding RNA 663
Ensembl Gene ID: ENSG00000266904
Ensembl Transcript ID: ENST00000586816
Location (hg19): chr19:19882381-19887203
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 306 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT063593; ENST00000586816.1
Alternative gene names: ENSG00000266904.1; LINC00663; ENSG00000266904.5; CTC-559E9.1; MGC39821


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 0.3507 non-coding 
CPAT coding probability 3.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00663:8 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZNF506-1:10
4.0 LINC00663:8
4.1 LINC00663:8
5.0 LINC00663:8
5.1 LINC00663:8
5.2 LINC00663:8