Transcript: LINC00663:9

Basic information

LNCipedia transcript ID: LINC00663:9 
HGNC Gene Symbol: LINC00663    
HGNC Full Gene Name: long intergenic non-protein coding RNA 663
Ensembl Gene ID: ENSG00000266904
Ensembl Transcript ID: ENST00000586645
Location (hg19): chr19:19868175-19887202
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1357 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000536451; ENST00000586645.1; ENST00000586645.5
Alternative gene names: ENSG00000228642; AC011477.1; ENSG00000266904.1; LINC00663; ENSG00000266904.5; CTC-559E9.1; MGC39821


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 16.8512 non-coding 
CPAT coding probability 65.08% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC00663:9 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZNF506-1:1
3.1 lnc-ZNF506-1:1
4.0 LINC00663:9
4.1 LINC00663:9
5.0 LINC00663:9
5.1 LINC00663:9
5.2 LINC00663:9