Transcript: LINC00678:5

Basic information

LNCipedia transcript ID: LINC00678:5 
LNCipedia gene ID: LINC00678
Location (hg19): chr11:27639573-27656098
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 570 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00020053; NONHSAT018517
Alternative gene names: XLOC_009399; linc-LIN7C;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 17.3554 non-coding 
CPAT coding probability 0.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00678:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BDNF-1:3
3.1 lnc-BDNF-1:3
4.0 LINC00678:5
4.1 LINC00678:5
5.0 LINC00678:5
5.1 LINC00678:5
5.2 LINC00678:5