Transcript: LINC00685:2

Basic information

LNCipedia transcript ID: LINC00685:2 
LNCipedia gene ID: LINC00685
Location (hg19): chrX:281385-282054
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 670 bp
Exons: 1
Sources: NONCODE v4; Refseq - Dec 2014
Alternative transcript names: NONHSAT136025; NR_027231; NR_027232
Alternative gene names: OTTHUMT00000055574


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 18.8669 non-coding 
CPAT coding probability 0.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00685:2 no no no no

Available literature

  1. Zhang (2015), Cancer Specific Long Noncoding RNAs Show Differential Expression Patterns and Competing Endogenous RNA Potential in Hepatocellular Carcinoma., PLoS ONE
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PLCXD1-1:3
4.0 LINC00685:2
4.1 LINC00685:2
5.0 LINC00685:2
5.1 LINC00685:2
5.2 LINC00685:2