Transcript: LINC00685:3

Basic information

LNCipedia transcript ID: LINC00685:3 
LNCipedia gene ID: LINC00685
Location (hg19): chrX:281391-285222
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3832 bp
Exons: 1
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA1870:1
Alternative gene names: OTTHUMT00000055574


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 43.04 non-coding 
CPAT coding probability 12.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC00685:3 no no no no

Available literature

  1. Zhang (2015), Cancer Specific Long Noncoding RNAs Show Differential Expression Patterns and Competing Endogenous RNA Potential in Hepatocellular Carcinoma., PLoS ONE
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 LINC00685:3
4.1 LINC00685:3
5.0 LINC00685:3
5.1 LINC00685:3
5.2 LINC00685:3