Transcript: LINC00685:6

Basic information

LNCipedia transcript ID: LINC00685:6 
LNCipedia gene ID: LINC00685
RefSeq ID: NR_027231
Location (hg19): :-
Strand:
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1532 bp
Exons: 0
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_027231.1
Alternative gene names: LINC00685


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC00685:6 no no no no

Available literature

  1. Zhang (2015), Cancer Specific Long Noncoding RNAs Show Differential Expression Patterns and Competing Endogenous RNA Potential in Hepatocellular Carcinoma., PLoS ONE
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 LINC00685:6
5.1 LINC00685:6
5.2 LINC00685:6