Transcript: LINC00687:6

Basic information

LNCipedia transcript ID: LINC00687:6 
LNCipedia gene ID: LINC00687
Location (hg19): chr20:11849722-11859032
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 240 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00028618; NONHSAT078643
Alternative gene names: XLOC_013652; linc-JAG1-2; dJ1012F16.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -220.8572 non-coding 
CPAT coding probability 27.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00687:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-JAG1-3:4
3.1 lnc-JAG1-5:4
4.0 LINC00687:6
4.1 LINC00687:6
5.0 LINC00687:6
5.1 LINC00687:6
5.2 LINC00687:6