Transcript: LINC00689:8

Basic information

LNCipedia transcript ID: LINC00689:8 
HGNC Gene Symbol: LINC00689    
HGNC Full Gene Name: long intergenic non-protein coding RNA 689
Ensembl Gene ID: ENSG00000231419
Ensembl Transcript ID: ENST00000413238
Location (hg19): chr7:158810099-158822886
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 4684 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000413238; ENST00000413238.1; AC004863.6-003; OTTHUMT00000322666.1; NONHSAT124557
Alternative gene names: ENSG00000231419; AC004863.6; ENSG00000231419.2; OTTHUMG00000151442.1; LINC00689; ENSG00000231419.6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -10.338 non-coding 
CPAT coding probability 7.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00689:8 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-WDR60-4:7
3.1 lnc-WDR60-4:7
4.0 LINC00689:8
4.1 LINC00689:8
5.0 LINC00689:8
5.1 LINC00689:8
5.2 LINC00689:8