Transcript: LINC00690:7

Basic information

LNCipedia transcript ID: LINC00690:7 
HGNC Gene Symbol: LINC00690    
HGNC Full Gene Name: long intergenic non-protein coding RNA 690
Ensembl Gene ID: ENSG00000233570
Ensembl Transcript ID: ENST00000429949
Location (hg19): chr3:16577827-16582880
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1365 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005407; ENST00000429949; ENST00000429949.1; RP11-194G10.1-001; OTTHUMT00000347260.1
Alternative gene names: XLOC_002588; linc-PLCL2-1; ENSG00000233570; RP11-194G10.1; ENSG00000233570.1; OTTHUMG00000157049.1; LINC00690;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -89.6801 non-coding 
CPAT coding probability 0.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00690:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-OXNAD1-2:5
3.1 lnc-OXNAD1-2:5
4.0 LINC00690:7
4.1 LINC00690:7
5.0 LINC00690:7
5.1 LINC00690:7
5.2 LINC00690:7