Transcript: LINC00824:10

Basic information

LNCipedia transcript ID: LINC00824:10 
HGNC Gene Symbol: LINC00824    
HGNC Full Gene Name: long intergenic non-protein coding RNA 824
Ensembl Gene ID: ENSG00000254275
Ensembl Transcript ID: ENST00000520206
Location (hg19): chr8:129417515-129440162
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2055 bp
Exons: 6
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000520206; ENST00000520206.1; RP11-89M16.1-005; OTTHUMT00000381572.1; NONHSAT129096; ENST00000520206.5
Alternative gene names: ENSG00000254275; RP11-234A3.1; ENSG00000254275.2; RP11-89M16.1; OTTHUMG00000165050.1; ENSG00000254275.6; LINC00824;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -68.4735 non-coding 
CPAT coding probability 8.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00824:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMEM75-2:8
3.1 lnc-TMEM75-2:7
4.0 LINC00824:10
4.1 LINC00824:10
5.0 LINC00824:10
5.1 LINC00824:10
5.2 LINC00824:10