Transcript: LINC00836:8

Basic information

LNCipedia transcript ID: LINC00836:8 
LNCipedia gene ID: LINC00836
Location (hg19): chr10:25940704-25971574
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 441 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00017799; ENST00000450270; ENST00000450270.1; RP11-307B23.1-001; OTTHUMT00000047252.1; NONHSAT011811
Alternative gene names: XLOC_008416; linc-MYO3A-3; ENSG00000228690; RP11-307B23.1; ENSG00000228690.1; OTTHUMG00000017833.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -236.189 non-coding 
CPAT coding probability 1.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00836:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GPR158-2:2
3.1 lnc-GPR158-2:2
4.0 LINC00836:8
4.1 LINC00836:8
5.0 LINC00836:8
5.1 LINC00836:8
5.2 LINC00836:8