Transcript: LINC00839:8

Basic information

LNCipedia transcript ID: LINC00839:8 
LNCipedia gene ID: LINC00839
Location (hg19): chr10:42971076-42990784
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2263 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000424751; ENST00000424751.1; RP11-178A10.1-002; OTTHUMT00000047673.1; NONHSAT012875
Alternative gene names: ENSG00000185904; RP11-178A10.1; ENSG00000185904.6; OTTHUMG00000018010.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 47.595 non-coding 
CPAT coding probability 18.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC00839:8 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BMS1-3:4
3.1 lnc-BMS1-3:4
4.0 LINC00839:8
4.1 LINC00839:8
5.0 LINC00839:8
5.1 LINC00839:8
5.2 LINC00839:8