Transcript: LINC00844:6

Basic information

LNCipedia transcript ID: LINC00844:6 
HGNC Gene Symbol: LINC00844    
HGNC Full Gene Name: long intergenic non-protein coding RNA 844
Ensembl Gene ID: ENSG00000237949
Ensembl Transcript ID: ENST00000432535
Location (hg19): chr10:60759386-60761303
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 477 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017830; ENST00000432535; ENST00000432535.1; RP11-456A18.1-001; OTTHUMT00000048153.1
Alternative gene names: XLOC_008489; linc-PHYHIPL; ENSG00000237949; RP11-456A18.1; ENSG00000237949.1; OTTHUMG00000018273.1; LINC00844;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -186.61 non-coding 
CPAT coding probability 0.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00844:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PHYHIPL-1:4
3.1 lnc-PHYHIPL-2:4
4.0 LINC00844:6
4.1 LINC00844:6
5.0 LINC00844:6
5.1 LINC00844:6
5.2 LINC00844:6