Transcript: LINC00845:2

Basic information

LNCipedia transcript ID: LINC00845:2 
HGNC Gene Symbol: LINC00845    
HGNC Full Gene Name: long intergenic non-protein coding RNA 845
Ensembl Gene ID: ENSG00000227244
Ensembl Transcript ID: ENST00000417931
Location (hg19): chr10:62776033-62786178
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 696 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Hangauer et al., 2013; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000417931; ENST00000417931.1; RP11-322C8.2-002; OTTHUMT00000048218.1; NONHSAT013558; FPKM1_group_3368_transcript_1
Alternative gene names: ENSG00000227244; RP11-322C8.2; ENSG00000227244.1; OTTHUMG00000018291.1; ENSG00000227244.2; LINC00845;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -175.8451 non-coding 
CPAT coding probability 0.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00845:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CDK1-1:2
3.1 lnc-CDK1-2:2
4.0 LINC00845:2
4.1 LINC00845:2
5.0 LINC00845:2
5.1 LINC00845:2
5.2 LINC00845:2