Transcript: LINC00847:13

Basic information

LNCipedia transcript ID: LINC00847:13 
HGNC Gene Symbol: LINC00847    
HGNC Full Gene Name: long intergenic non-protein coding RNA 847
Ensembl Gene ID: ENSG00000245060
Ensembl Transcript ID: ENST00000502162
Location (hg19): chr5:180258024-180262726
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1809 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000502162; ENST00000502162.2; CTC-205M6.2-003; OTTHUMT00000368346.1
Alternative gene names: ENSG00000245060; CTC-205M6.2; ENSG00000245060.2; OTTHUMG00000162270.1; LINC00847; ENSG00000245060.6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.2888 non-coding 
CPAT coding probability 9.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00847:13 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BTNL8-3:3
3.1 lnc-BTNL8-3:3
4.0 LINC00847:13
4.1 LINC00847:13
5.0 LINC00847:13
5.1 LINC00847:13
5.2 LINC00847:13