Transcript: LINC00850:2

Basic information

LNCipedia transcript ID: LINC00850:2 
HGNC Gene Symbol: LINC00850    
HGNC Full Gene Name: long intergenic non-protein coding RNA 850
Ensembl Gene ID: ENSG00000280752
Ensembl Transcript ID: ENST00000629221
RefSeq ID: NR_109813
Location (hg19): :-
Strand:
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 685 bp
Exons: 0
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000629221.1; NR_109813.1
Alternative gene names: ENSG00000280752.1; LINC00850


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC00850:2 no no no no

Available literature

  1. Tran (2013), Molecular characterization of an X(p21.2;q28) chromosomal inversion in a Duchenne muscular dystrophy patient with mental retardation reveals a novel long non-coding gene on Xq28., J. Hum. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 LINC00850:2
5.1 LINC00850:2
5.2 LINC00850:2