Transcript: LINC00852:2

Basic information

LNCipedia transcript ID: LINC00852:2 
HGNC Gene Symbol: LINC00852    
HGNC Full Gene Name: long intergenic non-protein coding RNA 852
Ensembl Gene ID: ENSG00000231177
Ensembl Transcript ID: ENST00000475197
RefSeq ID: NR_026829
Location (hg19): chr3:10326103-10327430
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1328 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000475197.1; GHRLOS2-001; OTTHUMT00000339647.1; NONHSAT087925; NR_026829; NR_026829.1
Alternative gene names: ENSG00000231177.4; GHRLOS2; OTTHUMG00000155362.1; LINC00852; NAG73; GHRL-AS2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -118.6801 non-coding 
CPAT coding probability 7.96% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00852:2 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-IRAK2-1:2
4.0 LINC00852:2
4.1 LINC00852:2
5.0 LINC00852:2
5.1 LINC00852:2
5.2 LINC00852:2