Transcript: LINC00853:3

Basic information

LNCipedia transcript ID: LINC00853:3 
LNCipedia gene ID: LINC00853
Location (hg19): chr1:47644290-47645982
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1267 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00000929
Alternative gene names: XLOC_000175; linc-CMPK1-3; ncRNA-a4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -140.6404 non-coding 
CPAT coding probability 3.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00853:3 no no no no

Available literature

  1. Ørom (2010), Long noncoding RNAs with enhancer-like function in human cells., Cell


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CYP4A22-2:1
3.1 lnc-CYP4A22-2:1
4.0 LINC00853:3
4.1 LINC00853:3
5.0 LINC00853:3
5.1 LINC00853:3
5.2 LINC00853:3