Transcript: LINC00853:6

Basic information

LNCipedia transcript ID: LINC00853:6 
HGNC Gene Symbol: LINC00853    
HGNC Full Gene Name: long intergenic non-protein coding RNA 853
Ensembl Gene ID: ENSG00000224805
Ensembl Transcript ID: ENST00000429328
RefSeq ID: NR_047498
Location (hg19): chr1:47644922-47646011
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 661 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000429328.2; PDZK1IP1-AS1-001; OTTHUMT00000021648.2; NR_047498; NR_047498.1
Alternative gene names: ENSG00000224805.2; PDZK1IP1-AS1; OTTHUMG00000007850.2; LINC00853; ncRNA-a4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -140.6404 non-coding 
CPAT coding probability 4.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00853:6 no no no no

Available literature

  1. Ørom (2010), Long noncoding RNAs with enhancer-like function in human cells., Cell


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CYP4A22-2:2
4.0 LINC00853:6
4.1 LINC00853:6
5.0 LINC00853:6
5.1 LINC00853:6
5.2 LINC00853:6