Transcript: LINC00861:4

Basic information

LNCipedia transcript ID: LINC00861:4 
HGNC Gene Symbol: LINC00861    
HGNC Full Gene Name: long intergenic non-protein coding RNA 861
Ensembl Gene ID: ENSG00000245164
Ensembl Transcript ID: ENST00000500989
Location (hg19): chr8:126953373-126963433
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 5330 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000500989; ENST00000500989.2; RP11-622O11.2-001; OTTHUMT00000381473.1
Alternative gene names: ENSG00000245164; RP11-622O11.2; ENSG00000245164.2; OTTHUMG00000165025.1; LINC00861; ENSG00000245164.6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -27.4328 non-coding 
CPAT coding probability 1.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00861:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM84B-7:2
3.1 lnc-FAM84B-7:2
4.0 LINC00861:4
4.1 LINC00861:4
5.0 LINC00861:4
5.1 LINC00861:4
5.2 LINC00861:4