Transcript: LINC00862:2

Basic information

LNCipedia transcript ID: LINC00862:2 
LNCipedia gene ID: LINC00862
Location (hg19): chr1:200298333-200343319
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 726 bp
Exons: 5
Sources: NONCODE v4
Alternative transcript names: NONHSAT008689
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -172.7271 non-coding 
CPAT coding probability 0.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00862:2 no no no no

Available literature

  1. Balloy (2017), Bronchial Epithelial Cells from Cystic Fibrosis Patients Express a Specific Long Non-coding RNA Signature upon <i>Pseudomonas aeruginosa</i> Infection., Front Cell Infect Microbiol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C1orf98-1:2
4.0 LINC00862:2
4.1 LINC00862:2
5.0 LINC00862:2
5.1 LINC00862:2
5.2 LINC00862:2