Transcript: LINC00862:4

Basic information

LNCipedia transcript ID: LINC00862:4 
HGNC Gene Symbol: LINC00862    
HGNC Full Gene Name: long intergenic non-protein coding RNA 862
Ensembl Gene ID: ENSG00000203721
Ensembl Transcript ID: ENST00000637098
Location (hg19): chr1:200335719-200369833
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1400 bp
Exons: 6
Sources: Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000637098.1
Alternative gene names: ENSG00000203721.6; LINC00862;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -69.725 non-coding 
CPAT coding probability 1.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00862:4 no no no no

Available literature

  1. Balloy (2017), Bronchial Epithelial Cells from Cystic Fibrosis Patients Express a Specific Long Non-coding RNA Signature upon <i>Pseudomonas aeruginosa</i> Infection., Front Cell Infect Microbiol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 LINC00862:4
5.0 LINC00862:4
5.1 LINC00862:4
5.2 LINC00862:4