Transcript: LINC00871:8

Basic information

LNCipedia transcript ID: LINC00871:8 
HGNC Gene Symbol: LINC00871    
HGNC Full Gene Name: long intergenic non-protein coding RNA 871
Ensembl Gene ID: ENSG00000258700
Ensembl Transcript ID: ENST00000556869
Location (hg19): chr14:46940564-46970814
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 456 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000556869; ENST00000556869.1; RP11-1A16.1-003; OTTHUMT00000410778.2
Alternative gene names: ENSG00000258700; RP11-1A16.1; ENSG00000258700.1; OTTHUMG00000170871.3; LINC00871; ENSG00000258700.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -175.1641 non-coding 
CPAT coding probability 0.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00871:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FANCM-5:4
3.1 lnc-FANCM-6:4
4.0 LINC00871:8
4.1 LINC00871:8
5.0 LINC00871:8
5.1 LINC00871:8
5.2 LINC00871:8