Transcript: LINC00877:1

Basic information

LNCipedia transcript ID: LINC00877:1 
HGNC Gene Symbol: LINC00877    
HGNC Full Gene Name: long intergenic non-protein coding RNA 877
Ensembl Gene ID: ENSG00000241163
Ensembl Transcript ID: ENST00000626474
Location (hg19): chr3:72110212-72328654
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 596 bp
Exons: 5
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000626474.2
Alternative gene names: ENSG00000241163.7; LINC00877;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -90.6302 non-coding 
CPAT coding probability 0.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00877:1 no no no no

Available literature

  1. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 LINC00877:1
4.1 LINC00877:1
5.0 LINC00877:1
5.1 LINC00877:1
5.2 LINC00877:1