Transcript: LINC00877:10

Basic information

LNCipedia transcript ID: LINC00877:10 
LNCipedia gene ID: LINC00877
RefSeq ID: NR_104116
Location (hg19): chr3:72084670-72149606
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2315 bp
Exons: 7
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_104116; NR_104116.1
Alternative gene names: ; LINC00877


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -63.5428 non-coding 
CPAT coding probability 8.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00877:10 no no no no

Available literature

  1. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RYBP-4:12
4.0 LINC00877:10
4.1 LINC00877:10
5.0 LINC00877:10
5.1 LINC00877:10
5.2 LINC00877:10